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New modules
flowtracks.clean: cleaning chain for raw tracker output -- repair, Savitzky-Golay smoothing, kink split, two stitching passes -- from flat arrays (clean_trajectories), withCLEAN_DEFAULTS(no default frame rate),resolve_settings(defaults <- parameter section <- overrides, with the source of every value),trajectories_from_arrays,kink_split.flowtracks.merge: merging the trajectories of two camera systems that see a common volume -- rigid map from same-frame particles (estimate_rigid_map),apply_rigid,overlap_counts,best_partners,duplicates.
Graphics
animate_trajectories_3d: off-screen 3D movie of trailing beads coloured by a velocity component, with grey back walls, grid labels, custom font and closed outlines (e.g. the rims of a cell).- Units in axis titles, colour bars and VTK field data.
Other
- Phasing: one shared bin definition (
n_frames_in_period,n_phases,phase_width), eulerian_grid aliases. - Writers record units attributes.
- Render tests skip cleanly on headless machines.