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Description
What happens if measurement table contains an observableId that is not defined in the observables table:
File "PEtab/petab/lint.py", line 127, in check_measurement_df
trafo = observable_df.loc[obs_id, OBSERVABLE_TRANSFORMATION]
File "lib/python3.7/site-packages/pandas/core/indexing.py", line 1761, in __getitem__
return self._getitem_tuple(key)
File "lib/python3.7/site-packages/pandas/core/indexing.py", line 1271, in _getitem_tuple
return self._getitem_lowerdim(tup)
File "lib/python3.7/site-packages/pandas/core/indexing.py", line 1388, in _getitem_lowerdim
section = self._getitem_axis(key, axis=i)
File "lib/python3.7/site-packages/pandas/core/indexing.py", line 1964, in _getitem_axis
return self._get_label(key, axis=axis)
File "lib/python3.7/site-packages/pandas/core/indexing.py", line 624, in _get_label
return self.obj._xs(label, axis=axis)
File "lib/python3.7/site-packages/pandas/core/generic.py", line 3537, in xs
loc = self.index.get_loc(key)
File "lib/python3.7/site-packages/pandas/core/indexes/base.py", line 2648, in get_loc
return self._engine.get_loc(self._maybe_cast_indexer(key))
File "pandas/_libs/index.pyx", line 111, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 138, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 1618, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 1626, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'K27me0K36me0'
What should have happened:
A more informative message should be printed (and potentially validation should continue)
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