Add SbmlModel.from_antimony
#331
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Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## develop #331 +/- ##
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- Coverage 74.36% 74.24% -0.13%
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Files 53 53
Lines 5138 5168 +30
Branches 903 910 +7
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+ Hits 3821 3837 +16
- Misses 977 984 +7
- Partials 340 347 +7 ☔ View full report in Codecov by Sentry. |
dweindl
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dilpath
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| model = SbmlModel.from_antimony( | ||
| "fixedParameter1 = 0.5\n" | ||
| "fixedParameter2 = 1.0\n" | ||
| "dynamicParameter1 = 0.0\n" | ||
| "observableParameter1_obs1 = 0.0\n" | ||
| "observableParameter2_obs1 = 0.0\n" | ||
| "observableParameter1_obs2 = 0.0" | ||
| ) |
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Use """ instead of \n? Or does antimony interpret indentation?
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Makes sense. No, it doesn't.
Undecided. Convenient, but not really a strong enough reason to deviate from SBML and make things less portable. |
Simplify creating a PEtab SbmlModel from antimony files or strings. Replace simplesbml by antimony in tests.
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Simplify creating a PEtab SbmlModel from antimony files / strings.
Replace simplesbml by antimony in tests.