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new functionality:

  • output of proteomics abundance data (imputed)
  • ability to balance train/test/validate by auc for example
  • conversion of mRECIST drug response metric in PDX datasets to auc
    • 'CR' -> 0.1
    • 'PR' -> 0.2
    • 'SD' -> 0.5
    • 'PD' -> 1.0

@ymahlich ymahlich linked an issue Aug 18, 2025 that may be closed by this pull request
@ymahlich ymahlich marked this pull request as ready for review August 18, 2025 23:15
@jjacobson95 jjacobson95 merged commit 6dd5857 into main Aug 19, 2025
@ymahlich ymahlich deleted the 390-update-improve-wrapper-to-output-proteomics branch August 20, 2025 21:27
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update improve wrapper to output proteomics

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