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Xian Chang edited this page Jan 26, 2026 · 14 revisions

Welcome to the stoat wiki!

Preparing the graphs and input

graph conversion and indexing
generating the VCF input for stoat vcf

Subcommands

stoat vcf
stoat graph
stoat BHcorrect

Wiki pages Pages 10

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Code overview
Generating the VCF input for `stoat vcf`
Input graphs and indexes
PR Log
stoat BHcorrect
stoat change‐ref
stoat graph
stoat test
stoat vcf

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