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stoat BHcorrect is used to perform the Benjamini-Hochberg procedure and add the adjusted p-value to a tsv file produced by stoat test.
stoat BHcorrect
stoat test
stoat BHcorrect --tsv [tsv file] --p-index [index of p-value column (1-indexed)] --adjusted-p-index [index of adjusted p-value column]