stoat BHcorrect

stoat BHcorrect is used to perform the Benjamini-Hochberg procedure and add the adjusted p-value to a tsv file produced by stoat vcf or `stoat graph. Note that both commands perform BH correction by default.

This is useful if stoat is being run multiple times for the same experiment. For example, if the input graph is split by chromosome and stoat is run on each chromosome separately, but the BH correction must be done on all chromosomes at once.

Usage

stoat BHcorrect --tsv [tsv file] --p-index [index of p-value column (1-indexed)] --adjusted-p-index [index of adjusted p-value column]