PangTreeGUI is a web-browser tool. It enables direct calling PangtreeBuild but also loading the JSON file which is the result of calling PangtreeBuild.
- First you need to clone this repository:
$ git clone https://github.com/PangTree/PangTreeGUI.git- Create new virtualenv with python>=3.6:
$ virtualenv -p python3.6 your_venv_name- Activate your virtualenv:
$ source your_venv_name/bin/activateThe name of the current virtual environment appears to the left of the prompt. To exit your virtualenv just type deactivate.
- Change directory:
$ cd PangTreeGUI
- Install requirements:
$ pip install -r requirements.txt- Make sure PangtreeBuild package is installed.
$ pip install pangtreebuild
To use PangTreeGUI you need to activate your virtualenv ($ source your_venv_name/bin/activate) and be in the PangTreeGUI folder.
$ python run.py
A link to the application should appear in the terminal. Open the application by clicking on it or typing 127.0.0.1:8052 in the web browser (tested in Chrome and Firefox).
This software is developed with support of OPUS 11 scientific project of National Science Centre: Incorporating genomic variation information into DNA sequencing data analysis
This project is licensed under the MIT License - see the LICENSE.md file for details