ProteinDJ v1.1.0 - Minor updates and bug fixes

This release addresses feedback from users with improvements to documentation and usability. It also resolves some bugs with Bindsweeper and adds new parameters to zip PDB file outputs and to enable Boltz-2x functionality.

What's Changed

• Added warning about non-standard amino acids in input files by @joshhardywehi in #2
• Restored .gitignore and removed timing.csv file generation by @joshhardywehi in #3
• Adding a unique date/time to output directory name by @joshhardywehi in #4
• Fix: Added default for bindsweeper_param_combo parameter by @joshhardywehi in #5
• BindSweeper fixes by @joshhardywehi in #6
• Documentation updates and new optional parameters by @joshhardywehi in #7
• Update to v1.1 by @joshhardywehi in #8

Full Changelog: v1.0.0...v1.1.0

Thanks to @Birkinshaw, @dvbrown, @knimak, @nskirk for testing and feedback