PanelPal v3.0.0

Added

New core functions:

• panel_to_genes.py - script for returning a list of genes included on a given panel
• Installation and Documentation:
• readthedocs (https://panel-pal.readthedocs.io/en/latest/)

Database

• Database reconfigured to SQLalchemy object-relational configuration. This is not backwards compatible.

Testing:

• Unit tests for new functions
• Continuous Integration testing with Jenkins.

Changed

• accessories/panel_app_api_functions.py updated to extend time to request timeout to 25s
• accessories/variant_validator_api_functions.py updated to add functionality for creating bed_files directory.
• generate_bed.py - new function added to check if a bed file already exists for given R Code and version.
• main.py - updated to incorporate new functionalities
• settings.py - updated to incorporate logging from database