0.2.3

Release with new chopmicrobiome DockerHub account

What's Changed

• Fix pipeline callbacks that fail under multiprocessing pickling by @Ulthran in #26

Full Changelog: 0.2.2...0.2.3

0.2.2

Remove check-version workflow in CI/CD

Full Changelog: 0.2.1...0.2.2

0.2.1

What's Changed

• Switch versioneer integration to build-time dependency mode by @Ulthran in #24

Full Changelog: 0.2.0...0.2.1

0.2.0

Major internal restructure to use strong typing system with generics to handle single/paired reads in the pipeline. Also adds pigz (optional) and multiprocessing for parallel processing.

What's Changed

• Revamp test suite for pipelines and CLI by @Ulthran in #18
• Fix pigz-backed GzipFileType text handling by @Ulthran in #19
• Enable multiprocessing for read pipelines by @Ulthran in #20
• Fix subsample command to return stats by @Ulthran in #22
• Use filter_reads for subsampling by @Ulthran in #23
• Add pigz and worker pool by @Ulthran in #17

Full Changelog: 0.1.0...0.2.0

0.1.0

Include ReadStats with each filter/trim operation

What's Changed

• Refine subcommand pipelines by @Ulthran in #14

Full Changelog: 0.0.2...0.1.0

0.0.2

Fix build action archiving

Full Changelog: 0.0.1...0.0.2

0.0.1

Initial release for PyPi and DockerHub

What's Changed

• Add CI/CD by @Ulthran in #3
• Allow gzipped fastqs by @Ulthran in #4
• New data model by @kylebittinger in #5
• Formatting and fixes by @Ulthran in #6
• Trim moving average by @kylebittinger in #7
• Add filter-seqids subcommand by @kylebittinger in #9
• Update to dynamic version and new GHA workflows by @Ulthran in #10
• Add seed argument for subsample command by @kylebittinger in #11
• Set up CI and release automation by @Ulthran in #12
• Add Dockerfile for containerized usage by @Ulthran in #13

New Contributors

• @Ulthran made their first contribution in #3
• @kylebittinger made their first contribution in #5

Full Changelog: https://github.com/PennChopMicrobiomeProgram/heyfastq/commits/0.0.1