results

Summary Statistic Annotations

Tool-specific Annotations

Annotation Order

The number of columns is data-dependent. Left click to view or right click to download the example metadata results file. These results were created by running the GEA pipeline on the test data specified in the Manual on January 23, 2024.

1. Summary Statistics (columns 2-17 in example results)
   a. includes fimH and clermont (E. coli only)
2. MLST Annotations (columns 18-45)
3. Serotype Annotations (columns 46-57)
4. Virulence Annotations (columns 58-182) E. coli only
5. ResFinder Annotations (columns 183-196)
6. PlasmidFinder Annotations (columns 197-217)
7. 5loci Annotations (none in example)