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Expand wiki to 4 sibling sub-wikis + move reading-queue#1

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Jammy2211 merged 1 commit into
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feature/pyautopaper-wiki-expansion
May 22, 2026
Merged

Expand wiki to 4 sibling sub-wikis + move reading-queue#1
Jammy2211 merged 1 commit into
mainfrom
feature/pyautopaper-wiki-expansion

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Summary

  • Adds 4 new sibling sub-wikis alongside lensing_wiki/: smbh_wiki/, cti_wiki/, methods_wiki/, galaxies_wiki/. Each inherits the schema from lensing_wiki/CLAUDE.md and contains its own CLAUDE.md, index.md, log.md, seed concept / entity pages, and filename-inferred source-collection pages covering ~422 papers from the folders the initial wiki build left out (SMBHs, CTI, Euclid, MASSIVE-survey ETGs, IFU surveys, COSMOS, Bayesian-inference methods, samplers, simulations, etc.).
  • Extends lensing_wiki/ with new source pages (pyautolens-papers, frb-lenses, weak-lensing, wdm-and-lya, reviews-and-summaries) and additions to cluster-lensing, dark-matter-substructure, gr-cosmology, interferometric-lensing.
  • Adds PyAutoPaper/index.md (top-level map across all sub-wikis) and PyAutoPaper/reading-queue.md (moved from admin_jammy/papers.md), making PyAutoPaper the unified paper-management repo.
  • README.md rewritten to describe the new multi-wiki layout.
  • 9 root .bib bibliography files now tracked (cooper, library, library2, library_jam, libraryipft, manual, pyautofit, pyautolens, qiuhan).
  • All in-repo PDFs (~620) removed after off-repo backup confirmation. They were gitignored to begin with, so no PDF deletion appears in this diff; the File: line in every source stub is the archival anchor for restore. Preserved non-PDF reference files (Hubble1926.321H, devaucoleurs1948.247D, CTI/Hall1952Theory, DarkMatterModels/Navarro1996StructureCDMHalos.563N, LightProFFits/devVaucoleuris1948pdf, Euclid/Paykari2020.bib, Medical/Liu2024CUPRCT.htm) are tracked.
  • Per-paper stubs remain status: stub (filename-inferred, unread) — same convention as the initial 193-paper build. See each sub-wiki's log.md for scope.

Companion PR in admin_jammy: removes papers.md and points README.md / claude.md at the new location.
Companion change in PyAutoPrompt: small README.md update (committed directly to main since it's only 2 lines listing PyAutoPaper in the repo map).

Test plan

  • Open PyAutoPaper/index.md and follow links into each sub-wiki's index.md.
  • Spot-check 5 random [[wiki-links]] per sub-wiki resolve (forward-refs to unwritten pages are expected and OK).
  • Confirm reading-queue.md content matches the previous admin_jammy/papers.md.
  • Verify find PyAutoPaper -name "*.pdf" | wc -l returns 0.
  • Verify the 9 .bib files render in any LaTeX setup that previously used them.

🤖 Generated with Claude Code

Adds sibling sub-wikis (smbh_wiki, cti_wiki, methods_wiki, galaxies_wiki)
covering ~422 papers across the remaining PDF folders that the initial
lensing_wiki build left out (SMBHs, CTI, Euclid, MassiveEllPaper,
Bulge_Disk_Decomp, LightProFFits, IFUs, Manga, COSMOS, StellarHalos,
High_Redshift_galaxies, Dark_Matter_Geometry, Stats, GaussianLinearModels,
PPLs, Deep Learning, Software, Simulation, AndrewSuggests, UnRead,
SpiralsMorph, Collaborations, GWB, Medical, and root-level singletons).

Each sub-wiki inherits the schema from lensing_wiki/CLAUDE.md and
contains: CLAUDE.md, index.md, log.md, seed concepts/entities, and
filename-inferred status: stub source pages. lensing_wiki itself is
extended with new pages (pyautolens-papers, frb-lenses, weak-lensing,
wdm-and-lya, reviews-and-summaries) and additions to existing source
pages (cluster-lensing, dark-matter-substructure, gr-cosmology,
interferometric-lensing).

Top-level changes:
- new index.md mapping the multi-wiki layout.
- README.md rewritten to describe the new layout and the post-deletion
  archival role of the File: paths in stubs.
- reading-queue.md added (moved from admin_jammy/papers.md) so
  PyAutoPaper becomes the unified paper-management repo.
- 9 .bib bibliography files at the repo root now tracked.
- All in-repo PDFs removed (~620 files, ~30 folders) after off-repo
  backup confirmation; gitignored anyway so no actual deletion is in
  this diff. The remaining non-PDF reference files (Hubble1926.321H,
  devaucoleurs1948.247D, CTI/Hall1952Theory,
  DarkMatterModels/Navarro1996…, LightProFFits/devVaucoleuris1948pdf,
  Euclid/Paykari2020.bib, Medical/Liu2024CUPRCT.htm) are preserved
  and tracked.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
@Jammy2211 Jammy2211 merged commit 65b69e1 into main May 22, 2026
@Jammy2211 Jammy2211 deleted the feature/pyautopaper-wiki-expansion branch May 22, 2026 18:16
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