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Use new BiocGenerics::transform() with new signature#281

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mikejiang merged 1 commit into
RGLab:develfrom
hpages:devel
May 27, 2026
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Use new BiocGenerics::transform() with new signature#281
mikejiang merged 1 commit into
RGLab:develfrom
hpages:devel

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@hpages hpages commented May 27, 2026

Hi @mikejiang,

We've recently added the transform() generic to BiocGenerics. See Bioconductor/BiocGenerics@54579af

Note that this new generic uses the more conventional tranform(x, ...) interface rather than transform(_data, ...).

This PR makes the necessary adjustments in flowCore to use this new generic instead of defining its own.

PRs for ncdfFlow, flowWorkspace, and ggcyto also coming in the next minutes.

Thanks,
H.

PS: I didn't include the full re-oxygenation in the PR because it touches too many files but it would not hurt to do it at some point.

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