Add HPC tricks & gotchas: myeff, set -euo pipefail, storage hygiene, AI agents Fold in content from the lab's HPC Tricks & Gotchas slides: DIY seff (myeff), sacct/sstat tracking tips, #farm_issues thresholds (100 CPUs / 256 GB on high), storage and transfer gotchas, Hive HiPPO steps and genome-center-grp, AI coding agent guidance. Note that Farm OnDemand cannot access /quobyte; use Hive OnDemand. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Rewrite Farm docs for current HPC@UCD setup; add Hive page Update for farm.hpc.ucdavis.edu, Dec 2025 partition changes (high/low), -A jrigrp, /quobyte/jrigrp storage, per-job scratch, central conda. Condense 10 Farm pages into Using Farm, Farm Tips and Tricks, and Farm Software Installation; add Using Hive. Remove old lab server. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>