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1. scrnaseq scrnaseq Public

   Forked from nf-core/scrnaseq

   A single-cell RNAseq pipeline for 10X genomics data

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2. rnaseq rnaseq Public

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

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3. differentialabundance differentialabundance Public

   Forked from nf-core/differentialabundance

   Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

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4. sarek sarek Public

   Forked from nf-core/sarek

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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5. methylseq methylseq Public

   Forked from nf-core/methylseq

   Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

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6. nanostring nanostring Public

   Forked from nf-core/nanostring

   An analysis pipeline for Nanostring nCounter expression data.

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