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Welcome to the official wiki for the workshop Snakemake for reproducible analyses lead by Amina Echchiki and Romain Feron, which will have its first session at the PyPharma 2019 conference in Basel.

In this wiki, you will find all the information presented during the workshop, sometimes with additional details and references to the official Snakemake's documentation. You will also find detailed information about the exercises for each section, as well as hints for the difficult parts.

All information in the current version of this wiki is based on the official documentation for Snakemake version 5.7.4.