Topology report trees #5
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…_prob during pre-proc
…ed on log_p ranked order
…I options for creation of topologies archive alongside the topologies report.
…into its own file
… row matching topology dict entry.
…for topology archive creation.
…ion positional information is available
…r clarity in topology archive creation
…final output results table will now include clonal prevalence values
…oth levels of loss prob being used
…nsensus tree post-process
…anup in TreeHolder. Clamping certain values in CLI options and performing writeable checks for output paths.
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