V0.1.7

Bug fix and new functions.

V0.1.6

1. Add a function to identify novel genes, which would be useful for non-model organisms.
2. bug fixs, like the wrapper to handle the update in bedtools (bedtools merge).

V0.1.4

1. Better wrapper for isoform annotation in "trackrun.py desc". Now the script will generate all the files needed for further plotting.
2. Add doc for intron retention calculation from reads, using desc function

V0.1.2

Major updates:

1. Support regional cluster (cluster) and junction cluster (clusterj) in trackrun.py.
2. New gff parser, support Ensembl and WormBase format better.
3. Add doc for all five scripts.
4. Bug fix and speed up for cluster functions.