Updated Annotate a VCF (markdown)

davmlaw committed Jul 13, 2026

Annotate wiki: lead with CLI + submit/fetch pattern; --wait as an option Reorder around submit-now/download-later, put the command line tool first, add it to the front page, and drop the redundant page-title header.

davmlaw committed Jul 13, 2026

Annotate wiki: document the vg_api annotate_vcf command line tool

davmlaw committed Jul 13, 2026

Annotate wiki: note annotate_vcf blocks; directory-based submit/fetch - Flag that annotate_vcf() blocks until done (can take hours). - Rework "submit now, download later" to run over a directory of VCFs and to store no state: the server keys uploads on the file's SHA-256, so re-hashing the same files later (sha256sum) is enough to fetch them - no pending.json.

davmlaw committed Jul 13, 2026

Add Annotate a VCF guide Move the long annotation examples (step-by-step flow, status inspection, submit-now-download-later) out of the README into a dedicated wiki page, and link it from Home.

davmlaw committed Jul 13, 2026