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pyBmodes 1.9.0

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@SMI-Lab-Inha SMI-Lab-Inha released this 22 May 03:16
· 177 commits to master since this release
v1.9.0
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Learn about vigilant mode.

Security, release-integrity, and documentation hardening on top of 1.8.1. No numerical change; the only public-API change is one new opt-in keyword.

Security

  • Legacy NPZ pickle loading is refused by default. ModalResult.load / CampbellResult.load raise on a legacy pre-1.0 pickled-object __meta__ (object-array unpickling can execute arbitrary code; SECURITY.md scopes NPZ deserialisation). Opt in for a trusted file with allow_legacy_pickle=True (still warns). Modern archives are pickle-free and unaffected.

Changed

  • PyPI publishing is gated on external validation. A tag publishes only if the Validation (external data) workflow has a green run on that exact commit.
  • Validation cloning is manifest-driven and --strict-checks every required clone (r-test + IEA-3.4/10/15/22 + WISDEM); content hashes are line-ending-normalized for cross-platform reproducibility; the validation job pins BLAS threads so the integration suite is deterministic.
  • Source-quality ratchet: Ruff expanded to UP/B/C4/SIM/PIE/RUF; mypy floor raised and the strict-typed surface grown from 10 to 29 modules.

Fixed

  • Tower.from_windio_floating honours a caller-supplied rna_tip in the screening tier (no companion deck / no injected platform) instead of zeroing it (#83).
  • Citation-grade references — every reference in VALIDATION.md and docs/theory.rst now carries a DOI, an NREL PDF, or an OSTI link (textbooks marked "no DOI").
  • Docs: corrected install guidance (pybmodes is on PyPI), reference-turbine sample count seven → eleven, validation-coverage wording (CI-gated public set vs maintainer-local BModes), and assorted metadata.

See CHANGELOG.md for the full [1.9.0] entry.

Install: pip install pybmodes==1.9.0

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