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PerturbGraph / Stable-Shift v1.0.0

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@Sajib-006 Sajib-006 released this 13 Sep 06:00
· 1 commit to main since this release
v1.0.0
0bb6555

PerturbGraph v1.0.0

First citable release of the Stable-Shift code associated with the ACM BCB 2026 paper “Stable-Shift: Predicting Transcriptional Responses of Unseen Gene Perturbations Using Graph Neural Networks with Biological Priors.”

Included

  • Stable-Shift benchmark implementations and classical/deep/GNN baselines.
  • Replogle/K562 and Norman benchmark launch scripts.
  • Perturb-seq preparation and qualitative-analysis utilities.
  • Pinned pip/Conda environments.
  • Canonical ACM citation and Zenodo-ready metadata.

Paper: https://doi.org/10.1145/3807503.3820871

Preprint: https://arxiv.org/abs/2606.24940

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