Christian M. Schürch Laboratory

Popular repositories Loading

1. Echinococcus Echinococcus Public

   Forked from ph4s3r/echino-class

   Implementing deep learning models for the classification of Echinococcus multilocularis infection in human liver tissue

   Jupyter Notebook 1

2. CODEX CODEX Public

   Forked from nolanlab/CODEX

   Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

   Java

3. NeighborhoodCoordination NeighborhoodCoordination Public

   Forked from nolanlab/NeighborhoodCoordination

   Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front"

   Jupyter Notebook

4. CellSeg-CRISP CellSeg-CRISP Public

   Forked from will-yx/CellSeg-CRISP

   Modified CellSeg nuclei segmenter that is compatible with stitched output images of the CRISP-CODEX processor

   Python

5. CRISP-CODEX-Processor CRISP-CODEX-Processor Public

   Forked from will-yx/CRISP-CODEX-Processor

   Convolutional Registration of Images at Sub-Pixel resolution

   Python

6. SpatialScore SpatialScore Public

   Forked from nolanlab/SpatialScore

   R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma".

   R 1