DivBase v0.1.2

DivBase is a service built and maintained by SciLifeLab Data Centre that enables life science researchers at Swedish institutions and their collaborators to manage, explore, and query genomic variants in VCF format alongside associated sample metadata.

Notable changes

• Documentation:
  • Metadata filters containing ! use single quotes, to avoid bash history expansion.
  • Fixed markdown code blocks that displayed incorrectly.
• CLI commands:
  • config add: re-adding an existing project prints a plain message instead of a Python warning.
  • dimensions create-metadata-template: writes Unix (LF) line endings.
  • files ls --tsv: output is now actually tab-separated.
  • files stream: no more BrokenPipeError message when piping into head or similar.
  • query vcf: a view -s placeholder now works in any step, not just the first.

Developer tools

• None

DivBase server deployment notes

• None