TranscriptoScope Windows v0.4.5

TranscriptoScope Windows v0.4.5

This release adds the pathway and network-analysis features added after v0.4.4.

Zenodo DOI

• Version DOI: https://doi.org/10.5281/zenodo.20824250
• Concept DOI: https://doi.org/10.5281/zenodo.20659461

What's new

• Added TF.Target.GTRD as a built-in pathway database option for both enrichment and ranked pathway analysis.
• Added a Network Analysis tab with WGCNA module summaries, module-trait correlations, gene-module assignments, eigengenes, CSV downloads, and result-bundle exports.
• Added pathway cnetplot rendering, PNG export, cnetplot edge CSV export, and result-bundle outputs.
• Updated pathway cnetplot gene labels to prefer readable gene symbols over systematic gene identifiers when annotation is available.
• Added GO DAG plotting for over-represented GO terms, including ontology-derived ancestor relationships, significance-level coloring, PNG export, node and edge CSV exports, and bundle outputs.
• Added offline GO ontology relationship tables and reproducible scripts for rebuilding bundled gene-set and DAG resources.

Validation

• Smoke test passed on Windows using the bundled/runtime Rscript.
• Optional KEGG REST smoke test was skipped unless TRANSCRIPTOSCOPE_TEST_KEGG=1 is set.

SHA256

51EA3C2B8932BCF2F125A1D4CE2F6E04515E5E069CE02901C66884B91309140D  TranscriptoScope_Windows_v0.4.5.zip