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TranscriptoScope Windows v0.4.6

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@Shettima123 Shettima123 released this 28 Jun 05:59
v0.4.6
38d4f81

TranscriptoScope v0.4.6 adds the current feature-extension build used for VP-16 and VP-17 validation.

Highlights:

  • Advanced DESeq2 design controls for additive adjustment factors, condition-by-factor interaction designs, interaction coefficients, condition effects within interaction levels, and custom resultsNames() coefficients.
  • Reproducibility bundles now record fitted DESeq2 formulas, contrast modes, result names, interaction settings, analysis-ready inputs, and rerun code.
  • User-facing diagnostics now explain common upload and workflow failures with concrete repair steps.
  • Downloadable example input templates are included for counts, metadata, normalized expression, fold-change tables, and custom gene sets.
  • ORA and GO DAG displays now handle duplicate labels and non-GO enrichment results more gracefully.
  • Pathway cnetplot labels are cleaner, the plotted network area is larger, and high-resolution TIFF export is available.
  • The top-level Refresh control now clears result/error state before reload.

Release notes:

  • Built from TranscriptoScope source version 0.4.6.
  • The Windows ZIP excludes KEGG-derived cache files. KEGG workflows use optional user-initiated KEGG REST access and local user caching.
  • The MIT license applies to TranscriptoScope source code and project-authored documentation only; third-party biological resources and R/Bioconductor packages remain subject to their own terms.

Validation summary:

  • R syntax parse checks passed for the updated R source files.
  • Release ZIP inspection confirmed bundled version 0.4.6.
  • Release ZIP inspection confirmed no bundled *_kegg.csv cache files.
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