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TranscriptoScope Windows v0.4.7

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@Shettima123 Shettima123 released this 10 Jul 07:58
v0.4.7
4ea79ba

TranscriptoScope v0.4.7 expands the validated Network Analysis workflow and its reproducibility exports.

Highlights:

  • Added sample-clustering dendrogram output before network interpretation.
  • Added scale-free topology fit and mean-connectivity plots plus the underlying candidate-power table.
  • Added a gene dendrogram with aligned module-color annotation.
  • Added downloadable module-size and module-trait heatmap PNG files.
  • Added module enrichment against the current upregulated, downregulated, and combined DEG sets.
  • Added six WGCNA CSV tables and five Network Analysis PNG files to the result bundle.
  • Extended the exported R rerun script to reproduce scale-free topology and module-enrichment tables.

Validation:

  • Core analytical validation passed 71/71 checks and 11/11 protocol items in two fresh R sessions.
  • The two core sessions produced identical analytical observations after run metadata was excluded and 12/12 byte-identical saved analytical artifacts.
  • VP-16 feature-extension validation passed 14/14 checks.
  • Expanded VP-17 WGCNA/Network Analysis validation passed 19/19 checks.
  • VP-17 independently verified sample clustering, scale-free topology, gene dendrogram/module colors, module enrichment, all six WGCNA tables, all five network plots, UI/download contracts, result-bundle contents, and reproducibility reruns.
  • The end-to-end developer smoke test passed from both the source tree and the packaged ZIP extracted under a path containing spaces.
  • Package inspection confirmed version 0.4.7, inclusion of the public VP-17 evidence note, and zero bundled KEGG cache files.

Release notes:

  • Built from TranscriptoScope source version 0.4.7.
  • The Windows ZIP excludes KEGG-derived cache files. KEGG workflows use optional user-initiated KEGG REST access and local user caching.
  • The MIT license applies to TranscriptoScope source code and project-authored documentation only; third-party biological resources and R/Bioconductor packages remain subject to their own terms.
  • WGCNA outputs are exploratory coexpression results and should not be interpreted as causal regulatory relationships.

Archive:

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