Refresh dependencies for all adapters and fix time helper

[AbdulRahmanAlHamali]

CI has been failing on all PRs for a while now. Example

https://github.com/Shopify/semian/actions/runs/20375211600/job/58551769047?pr=760

The reason is twofold:

1. We are stubbing all calls to clock_gettime, even the ones we are not really calling, and that are totally irrelevant to our code path.
2. This was only detected recently because the postgre adapter that was added, did not have a lock in the gemfile, so it started picking up a version of rails that has some calls to clock_gettime, and this is when the problem floated.

This PR is doing two things:

1. Running a bundle update for all our adapters, which updates them and also adds the missing lock file
2. Fixes the CI failure by making sure we are only stubbing the part that makes sense. The fix is hacky, but Mocha did not allow me a better approach (I researched this for a couple of hours and nothing worked)

[gmcgibbon]

This is a bit verbose. It seems to pass if you omit arguments from the stub, or use a helper and stub that instead.