README

Steps

• place raw data files in data/prod-dbname folder
• update config/config.py with db name
• runAll notebooks in src folder
  • prep
  • featurize
  • extractVariants
• visualize the results in visualize notebook

Folder structure

Name	Description
cache	Cached data files. separate by db name. Ignored by git
config	Configuration files
data	Input data files
data/prod	Production data files. Ignored by git
data/simple	Raw production data files
experiments	Experimental notebooks
scripts	Misc Python scripts e.g. to create content
src	Python notebooks