busco_find

Extracting BUSCO sequences from transcriptome assemblies after running the BUSCO tool.

busco_find -h
usage: busco_find [-h] [-l] [-b] [-e ] [-v ] transcriptome buscotable outdir

Extracting BUSCOs sequences from transcriptome assemblies

positional arguments:
  transcriptome     FASTA-file with transcripts
  buscotable        Full table from corresponding BUSCO run
  outdir            Output directory

options:
  -h, --help        show this help message and exit
  -l, --longest     For duplicated BUSCOs choose the longest transcript only
  -b, --best        For duplicated BUSCOs choose the best scoring transcript only
  -e, --exclude     File containing a list of IDs of BUSCOs to exclude
  -v, --verbosity   Verbosity level. Report progress after each 10^v scanned transcripts [default: 5]