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Add distance / dot product function for comparing spike train similarity #2192

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Merged
merged 22 commits into from
Feb 4, 2025
Merged

Add distance / dot product function for comparing spike train similarity #2192

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212a880
WIP
h-mayorquin Nov 10, 2023
3a3fa20
working distance function implementation
h-mayorquin Nov 10, 2023
bf2ad6c
logic inside out
h-mayorquin Nov 10, 2023
6dc6f7b
some improvements
h-mayorquin Nov 10, 2023
e5c7af8
working with less computation
h-mayorquin Nov 10, 2023
1ca0655
simplify norm calculation
h-mayorquin Nov 10, 2023
c07f466
Update src/spikeinterface/comparison/comparisontools.py
h-mayorquin Nov 12, 2023
a082543
remove joint calculation of dot product and norms
h-mayorquin Nov 12, 2023
74ebd22
Merge branch 'main' into add_distance_function
h-mayorquin Nov 13, 2023
7d2f017
large cleanup
h-mayorquin Nov 14, 2023
ab5925b
profile more flexible version
h-mayorquin Nov 14, 2023
4ad9c62
revert inversion of function order
h-mayorquin Nov 14, 2023
89cbc66
revert inversion of function order II
h-mayorquin Nov 14, 2023
340454b
Merge branch 'main' into add_distance_function
h-mayorquin Oct 8, 2024
5a6ba7c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 8, 2024
b98b7b2
Merge branch 'main' into add_distance_function
alejoe91 Jan 27, 2025
c08c199
Merge branch 'main' into add_distance_function
alejoe91 Feb 3, 2025
e9bbbb5
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 3, 2025
050e5f9
Merge branch 'main' of github.com:SpikeInterface/spikeinterface into …
alejoe91 Feb 3, 2025
89eb899
Expose agreement_method ark in basepairsortercomparison
alejoe91 Feb 3, 2025
25d515b
small separation
h-mayorquin Feb 4, 2025
ade9e08
renaming
alejoe91 Feb 4, 2025
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4 changes: 2 additions & 2 deletions src/spikeinterface/comparison/collision.py
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Expand Up @@ -15,11 +15,11 @@ class CollisionGTComparison(GroundTruthComparison):

Parameters
----------
gt_sorting : SortingExtractor
gt_sorting : BaseSorting
The first sorting for the comparison
collision_lag : float, default 2.0
Collision lag in ms.
tested_sorting : SortingExtractor
tested_sorting : BaseSorting
The second sorting for the comparison
nbins : int, default : 11
Number of collision bins
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