Update actions versions

.github/workflows/all-tests.yml

@@ -27,7 +27,7 @@ jobs:
         python-version: ["3.10", "3.13"]  # Lower and higher versions we support
         os: [macos-latest, windows-latest, ubuntu-latest]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Setup Python ${{ matrix.python-version }}
         uses: actions/setup-python@v6
         with:

.github/workflows/build-docs.yml

@@ -9,7 +9,7 @@ jobs:
       run:
         shell: bash -el {0}
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: conda-incubator/setup-miniconda@v2
         with:
           environment-file: environment_rtd.yml

.github/workflows/core-test.yml

@@ -19,7 +19,7 @@ jobs:
       matrix:
         os: ["ubuntu-latest", "macos-latest", "windows-latest"]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: '3.11'

.github/workflows/deepinterpolation.yml

@@ -19,7 +19,7 @@ jobs:
       matrix:
         os: ["ubuntu-latest"]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: '3.10'

.github/workflows/full-test-with-codecov.yml

@@ -19,7 +19,7 @@ jobs:
         # "macos-latest", "windows-latest"
         os: ["ubuntu-latest", ]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: '3.12'

.github/workflows/installation-tips-test.yml

@@ -17,7 +17,7 @@ jobs:
           - os: macos-latest
           - os: windows-latest
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - uses: actions/setup-python@v6
       with:
         python-version: '3.12'

.github/workflows/issue-on-change-matlab.yml

@@ -15,7 +15,7 @@ jobs:
       changed_files: ${{ steps.changed-files.outputs.all_changed_files }}
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Get changed files
         id: changed-files
         uses: tj-actions/changed-files@v46.0.1
@@ -32,7 +32,7 @@ jobs:
       issues: write
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Parse files names
         id: parse-files-names
         run: |

.github/workflows/publish-to-pypi.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Set up Python
         uses: actions/setup-python@v6
         with:

.github/workflows/test_containers_docker.yml

@@ -12,7 +12,7 @@ jobs:
       matrix:
         os: ["ubuntu-latest", "windows-latest"]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: '3.10'

.github/workflows/test_containers_singularity.yml

@@ -13,7 +13,7 @@ jobs:
         # "macos-latest", "windows-latest"
         os: ["ubuntu-latest", ]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: '3.10'

.github/workflows/test_containers_singularity_gpu.yml

@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: iterative/setup-cml@v1
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Deploy runner on EC2
         env:
           REPO_TOKEN: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
@@ -28,7 +28,7 @@ jobs:
       image: docker://iterativeai/cml:0-dvc2-base1-gpu
       options: --privileged --gpus all
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: Install dependencies
         run: |

.github/workflows/test_imports.yml

@@ -19,7 +19,7 @@ jobs:
       matrix:
         os: ["ubuntu-latest", "macos-latest", "windows-latest"]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
           python-version: "3.11"

.github/workflows/test_kilosort4.yml

@@ -18,7 +18,7 @@ jobs:
       matrix: ${{ steps.set-matrix.outputs.matrix }}
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up Python
         uses: actions/setup-python@v6
@@ -56,7 +56,7 @@ jobs:
         ks_version: ${{ fromJson(needs.versions.outputs.matrix) }}
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Setup Python ${{ matrix.python-version }}
         uses: actions/setup-python@v6