AttributeError: type object 'CLESolver' has no attribute 'model'

[briandrawert]

While testing #754 the following code:

r3 = model.run(solver=CLESolver)
r3.plot()

Produced the error:

2022-03-28 17:19:43,272 - root - WARNING - model = gillespy2.model is deprecated. Future releases of GillesPy2 may not support this feature.
2022-03-28 17:19:43,272 - root - WARNING - model = gillespy2.model is deprecated. Future releases of GillesPy2 may not support this feature.
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
~/Desktop/research/devils_dftd_modeling/../GillesPy2/gillespy2/core/model.py in run(self, solver, timeout, t, increment, show_labels, algorithm, **solver_args)
    992         try:
--> 993             return solver.run(model=self, t=t, increment=increment, timeout=timeout, **solver_args)
    994         except Exception as e:

~/Desktop/research/devils_dftd_modeling/../GillesPy2/gillespy2/solvers/numpy/CLE_solver.py in run(self, model, t, number_of_trajectories, increment, seed, debug, profile, live_output, live_output_options, timeout, resume, tau_tol, **kwargs)
    172                         'of GillesPy2 may not support this feature.')
--> 173         if self.model is None:
    174             if model is None:

AttributeError: type object 'CLESolver' has no attribute 'model'

The above exception was the direct cause of the following exception:

SimulationError                           Traceback (most recent call last)
<ipython-input-19-3eb83c44fd94> in <module>
----> 1 r3 = model.run(solver=CLESolver)
      2 r3.plot()

~/Desktop/research/devils_dftd_modeling/../GillesPy2/gillespy2/core/model.py in run(self, solver, timeout, t, increment, show_labels, algorithm, **solver_args)
    993             return solver.run(model=self, t=t, increment=increment, timeout=timeout, **solver_args)
    994         except Exception as e:
--> 995             raise SimulationError(
    996                 "argument 'solver={}' to run() failed.  Reason Given: {}".format(solver, e)
    997             ) from e

SimulationError: argument 'solver=<class 'gillespy2.solvers.numpy.CLE_solver.CLESolver'>' to run() failed.  Reason Given: type object 'CLESolver' has no attribute 'model'

[BryanRumsey]

Unable to re-create

    992         try:
--> 993             return solver.run(model=self, t=t, increment=increment, timeout=timeout, **solver_args)
    994         except Exception as e:

The above block indicates that the branch is out of date, try pull down the latest changes and re-run the notebook.