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DMRnet 0.3.1

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@SzymonNowakowski SzymonNowakowski released this 19 Jul 22:38
· 87 commits to master since this release

Major changes

  • GLAMER (Group LAsso MERger) algorithm added
  • Rebuild of the existing cross validation routine (models indexed by model dimension)
  • New cross validation routine added (models indexed by GIC) and made a new default
  • Handling of mismatched factor levels restructured

Stability improvements

  • Adding pivots in SOSnet for gaussian families
  • Adding a try-catch clause to recalculate QR decomposition for pivoted columns within rank in case of failure
  • Adding the regularization in gaussian family in DMR direct calls and calls via DMRnet
  • fixing NA values resulting in attempting non-penalized regression in case of non-full rank design matrices

Other improvements

  • Fixing how the parameters get passed in plot family of functions
  • Returning only non-zero coefficients in coef
  • Fixing DRMnet and cross validation in handling data with a single two-factor column
  • Fixing negative Wald statistics in binomial case
  • Workaround in GLAMER for cases of grpreg not observing a group constraint