Schneider, Michael P., et al. 2024.
scAbsolute: Measuring Single-Cell Ploidy and Replication Status.
Genome Biology 25 (1): 62.
https://doi.org/10.1186/s13059-024-03204-y.
Measuring single-cell ploidy and cell cycle status in single-cell DNA sequencing data. Please see the manuscript for details.
This repository contains the source code for the scAbsolute software and scripts to replicate the figures in the manuscript.
In order to run the code, to see examples of how to use the package and an easy-to-use workflow, we recommend using the lab's single-cell sequencing pipeline.