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v0.2.0 - FeastySplicingViper: Hydra Edition 🐍🐍🐍

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@johausmann johausmann released this 02 Jul 09:43
v0.2.0
e52e415

NeoRasp v0.2.0 - FeastySplicingViper: Hydra edition 🐍🐍🐍

The viper learned to break splice2neo into pieces just to put it back together — faster.

What's Changed

  • Implemented a scatter gather approach for splice2neo annotation steps.
  • Updated documentation to reflect changes.
  • Added benchmark directives to monitor ressource consumption.
  • Added experimental plotting script to create HTML report of resource usage.

Known Issue(s)

Please note that the scatter size for splice2neo should not be too small. Due to the lack of process safety for BSGenome and GenomicFeatures objects in R, these must be temporarily stored as separate copies per process (chunk), which leads to high disk I/O when processing many small chunks.

Full Changelog: v0.1.0...v0.2.0

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