Sequoia Container

A Docker container for genetic pedigree analysis using the Sequoia R package, built on Rocker/tidyverse.

Quick Start

Build the Container

docker build -t bnguyen29/sequoia .

Run Interactive R Session

docker run -it bnguyen29/sequoia R

Run with Volume Mount

docker run -v $(pwd):/workspace -w /workspace -it bnguyen29/sequoia R

Features

• Base: rocker/tidyverse:4.4.2
• Main Package: sequoia (genetic pedigree analysis)
• Current Sequoia Version: 2.11.4.0

Testing

Verify the installation:

docker run --rm bnguyen29/sequoia Rscript -e "library(sequoia); packageVersion('sequoia')"

Test with sample data:

docker run --rm bnguyen29/sequoia Rscript -e "library(sequoia); data(LH_HSg5); summary(LH_HSg5)"

Build and push to Docker Hub

For production deployment:

docker buildx build --platform linux/amd64 -t bnguyen29/sequoia:latest --push .