test: add MCP handler coverage and real Konclude integration tests - #33
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Add explainDiagnostics integration test (9 tests) exercising the full repair pipeline with real Konclude WASM: MIPS → hitting set → axiom weakening → per-axiom/full-set/minimality verification → repair brief. Includes degradation paths (empty hierarchy, oracle throws at each stage), laconic justifications, two-clash per-axiom-false/full-set-true, and weakening soundness verification (apply remove+add batch, re-check). Add explainEntailment handler tests (11 tests), provenance MCP tool arg parsing tests (11 tests), and loadOntology handler tests (6 tests). Remove 6 mocked explainDiagnostics tests from reasoning.test.ts that are now redundant with real Konclude integration coverage. Keep 6 handler-wiring tests that require mocking rdfManager (laconic fallback, matchWarning, SHACL threading, error wrapping, arg passthrough).
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Add explainDiagnostics integration test (9 tests) exercising the full repair pipeline with real Konclude WASM: MIPS → hitting set → axiom weakening → per-axiom/full-set/minimality verification → repair brief. Includes degradation paths (empty hierarchy, oracle throws at each stage), laconic justifications, two-clash per-axiom-false/full-set-true, and weakening soundness verification (apply remove+add batch, re-check).
Add explainEntailment handler tests (11 tests), provenance MCP tool arg parsing tests (11 tests), and loadOntology handler tests (6 tests).
Remove 6 mocked explainDiagnostics tests from reasoning.test.ts that are now redundant with real Konclude integration coverage. Keep 6 handler-wiring tests that require mocking rdfManager (laconic fallback, matchWarning, SHACL threading, error wrapping, arg passthrough).