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Version 0.3.0

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@TimVerschuren TimVerschuren released this 18 Sep 12:36
· 5 commits to main since this release
v0.3.0
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Learn about vigilant mode.

Version 0.3.0 of TeloVision introduces an overhauled repeat detection algorithm which enables the detection of larger telomeric repeats (e.g. Human telomeric repeats).

Changes:

  • Repeating sequences are now able to range between 5 and 24 nucleotides (previously 6 and 9).
  • Small variations in the repetitive sequence (e.g. deletions, larger insertions and substitutions) no longer cause breaks within a repeat.
  • New user input "Gap Size", allows the user to determine how large the gap between two repetitive regions is allowed to be for those repeats to count as one (default: size of detected repeat).
  • Levenshtein distance is now used to determine which repeat is the most fitting if multiple different repeats are detected.
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