Sequence Aligner v1.0 (Windows app)
A tunable DNA and protein sequence aligner as a native Windows app.
How to run
- Download SequenceAlignerApp-win-x64.zip below.
- Unzip it.
- Run SequenceAlignerApp.exe.
It is self-contained, so you do not need to install .NET or anything else. The 3D viewer and the AI structure feature need an internet connection.
What it does
Global, local, and semi-global alignment; linear or affine gaps; DNA or protein (BLOSUM62 / PAM250); whole-genome alignment with a banded method; a colored alignment view with readouts; a 3D structure viewer; and an AI secondary-structure predictor that runs on the GPU or NPU.