Skip to content

v0.7.5 public release

Choose a tag to compare

View all tags
@derikhaggard derikhaggard released this 17 Apr 14:58
v0.7.5
162f291

v0.7.5-public (4/30/24)

This is an extensive update to the previous pilot code released in 2020

  • Updated documentation and user manual
  • Streamlined steps for pipelining data sets, with increased flexibility for alternate study designs.
  • Encapsulated all R functions into the httrlib package, with improved handling of MongoDB connections and standardized queries on both Windows and Linux
  • Added functionality to pipeline smaller data sets to disk without MongoDB back-end
  • Added functionality to handle DESeq2 differential expression analysis of multi-conc reference chemicals
  • Added functionality to validate DB schema and verify fastq paths
  • Added extensive unit tests for both Python functions and R/DESeq2 functions to ensure reproducible results.
  • Added scripts to build and test complete environment for pipelining, using either venv or Docker.
Assets 2
Loading