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Removed --bamdir option: if you want to specify more than 1 bam file within a directory you can now simply use the same --bam option, specifying all bam files (e.g. --bam files/*.bam)
Added Bioconda and Biocontainer instructions on the README.
Added the --rrbs parameter: if specified (by default), it will add the --keepDups flag to MethylDackel to avoid removal of duplicates.