Code for the accepted version of the article

Protein-level summarization of feature (PSM)-level data is an important step in proteomics data analysis methods, including the MSstats workflow. MSstats and MSstatsTMT packages summarize features based on unique peptides. This package implements a statistical method to jointly summarize clusters of proteins that share features using weights specific to peptide-protein matches.

This version of the package was used to produce the results presented in an accepted version of the related article.