Add support for data augmentation via adapter layer to monai image transformation suite#25
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wli51 merged 9 commits intoWayScience:mainfrom Apr 23, 2026
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MattsonCam
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Apr 23, 2026
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Good job, @wli51 ! Added a few comments, monai looks like a good tool to use here
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@MattsonCam thanks for reviewing, addressed most of your comments, made a issue for one that is better for a separate enhancement PR for the future. Merging now! |
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Adds
src/virtual_stain_flow/datasets/base_wrapper_dataset.pygeneral abstraction for lighter-weight dataset wrappers that fulfill the basic torch dataset functions without needing to fully support the packageBaseImageDatasetimplementation which can be overwhelming.src/virtual_stain_flow/datasets/monai_aug_adapter_dataset.pyrealization of wrapper dataset for monai image transformation adaptation purposesexamples/4.data_augmentation_example.ipynbexample applying some monai transformations to dataset