v1.4.1

Fixed a minor bug in chromosome name parsing to allow '#' in chromosome names.

v1.4.0

1. Optimized the SDR calling;
2. Added the step for merging adjacent inversions;
3. Standardized BED output results;
4. Fixed installation.

v1.3.1

1.Optimized the inverison calling.
2. Fixed some small bugs.

v1.3.0

1. Optimized the identification of nested inversions.
2. Optimized the genotype module to reduce the run time and memory consumption.
3. Add an optional preprocessing step for alignment filtering.
4. Fixed bug in pair subcommand.
5. Fixed other small bugs.

Full Changelog: v1.2.0...v1.3.0

v1.2.0

1. Optimized the identification of translocations.
2. Fixed small bugs.

v1.1.0

1. Add three subcommands: plot, pair and reverse.
2. Optimized the identification of insertions, deletions, and inversions.
3. Fixed the bug of incomplete query coordinates in VCF and BED files.
4. Added some environmental dependencies.