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gene list
a-xavier edited this page Sep 12, 2019
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usage:
python3 tapes.py sort -i ./input.vcf -o ./output_folder/ --list "MLH1 PMS2 MSH6 MSH2 APC"
python3 tapes.py sort -i ./input.vcf -o ./output_folder/ --list ./gene_list.txt
By using the option --list with the sort or analyse option, a report containing only variants located in the user-supplied list of genes.
--list requires gene SYMBOLS, either in quotes separated by a space or as a .txt file with one gene symbol per lines.
The format of this report will be identical to the main report.