Prevent IsoQuant from creating any new genes

[sagnikbanerjee15]

Hello,

Is it possible for IsoQuant to quantify genes and isoforms present only in the reference gtf file, and not generate any new gene and/or isoform? Would the --no_model_construction achieve this?

Thank you

[andrewprzh]

Dear @sagnikbanerjee15

You are absolutely right, with --no_model_construction IsoQuant will only perfrom read-to-isoforms assignment and reference gene/isoform quantification. Novel transcript discovery will not be launched.

Best
Andrey