Too many erroneous kmers, the estimates might be unreliable #1520
Description of bugHey there, Thank you for helping with this warning error. Spades pipeline finished, but with warnings. I would really appreciate your guidance on the results and what implications this warning might have. Best, spades.logparams.txtSPAdes version4.2.0 Operating Systemmac OS Sequoia version 15.6.1 Python Version3.13.5 Method of SPAdes installationconda No errors reported in spades.log
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Answered by
asl
Sep 4, 2025
Replies: 1 comment 2 replies
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It seems you're having low-covered dataset with some uneven coverage. Hence the warning. The results might be suboptimal certainly |
2 replies
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Thank you for the answer! Do you have any recommendation to solve the error? If not, it is okay! |
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Well... it is the property of your input dataset. So, it is the question for you how you can fix it :) We can only sometimes diagnose it. |
Answer selected by
asl
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It seems you're having low-covered dataset with some uneven coverage. Hence the warning. The results might be suboptimal certainly