Updating Tutorials for 0.3.0 #86

dgmccart · 2024-08-26T23:11:43Z

Updated printed devices to include Zarr V3 devices
Updated tutorials for chunking configuration
Updated ways of accessing available data
Changed storage device from zarr to tiff in Getting Started
Added JSON files that capture new API fields

dgmccart · 2024-08-26T23:19:15Z

@aliddell There are 2 areas I need help with:

The descriptions of the Zarr directory in chunked.md and multiscale.md need improvement.
I am also not sure the most elegant way of accessing AvailableData given that get_available_data now returns AvailableDataContext. This applies to the framedata.md and livestream_napari.py.

Adding kind variable to the trigger setup

Updating to remove chunking

Removing references to chunking attribute

fixing broken ordered list

Adding Zarr V3

updating

Updating with Alan's changes

Adding Alan's edits

Updating multiscale

Updating for AvailableDataContext

dgmccart · 2024-09-04T17:38:29Z

Removed chunked.md and multiscale.md since we ran into bugs with the Zarr directory.

melissawm · 2024-09-04T17:39:49Z

Just rebased it, should be ok now!

aliddell

Some changes we can discuss in sync

docs/get_started.md

docs/tutorials/access_data/framedata.md

docs/tutorials/setup_acquisition/configure.md

docs/tutorials/setup_acquisition/select.md

docs/tutorials/setup_acquisition/storage.md

docs/tutorials/zarr/multiscale.md

docs/tutorials/zarr/chunked.md

Co-authored-by: Alan Liddell <aliddell@chanzuckerberg.com>

docs/tutorials/access_data/framedata.md

docs/tutorials/setup_acquisition/storage.md

Co-authored-by: Alan Liddell <aliddell@chanzuckerberg.com>

dgmccart requested a review from aliddell August 26, 2024 23:11

dgmccart mentioned this pull request Aug 27, 2024

Reflect changes to chunking API in release 0.2.0 #42

Closed

dgmccart added 22 commits September 4, 2024 14:32

Update trigger.md

588dcf6

Adding kind variable to the trigger setup

Update get_started.md

4e070a4

Updating to remove chunking

Update configure.md

7fae038

Removing references to chunking attribute

Update start_stop.md

d92d994

fixing broken ordered list

Update framedata.md

94725cc

Update storage.md

2dfc1cf

Adding Zarr V3

Update drivers.md

35719b1

Update select.md

9b71e06

Update sample_props.json

d882ba7

updating

Update get_started.md

482106a

Updating with Alan's changes

Update chunked.md

37f4bbe

Adding Alan's edits

Update compressed.md

10d960a

Update configure.md

853d0e5

Update multiscale.md

df5282f

Updating multiscale

Update chunked.md

5bccad4

Update chunked.md

b0e8f79

Update framedata.md

e4e1912

Update livestream_napari.py

9fcf063

Updating for AvailableDataContext

Update multiscale.md

3b3043b

Update multiscale.md

78f5b5c

Update framedata.md

eab0bc3

Update livestream_napari.py

67f1326

melissawm force-pushed the dgm_chunking branch from 7b88797 to 67f1326 Compare September 4, 2024 17:38

aliddell reviewed Sep 5, 2024

View reviewed changes

Update get_started.md

f96a12a

dgmccart and others added 11 commits September 5, 2024 11:30

Update framedata.md

ea562cb

Update docs/tutorials/access_data/framedata.md

c49a7a5

Co-authored-by: Alan Liddell <aliddell@chanzuckerberg.com>

Update docs/tutorials/setup_acquisition/configure.md

fe7a917

Co-authored-by: Alan Liddell <aliddell@chanzuckerberg.com>

Update select.md

510bbe2

Update storage.md

ee07d43

Delete docs/tutorials/zarr/chunked.md

4f50147

Delete docs/tutorials/zarr/multiscale.md

8e7bc78

Update index.md

16c1381

Update index.md

7eb3556

Update index.md

6aafaba

Update index.md

d75b236

aliddell approved these changes Sep 5, 2024

View reviewed changes

docs/tutorials/access_data/framedata.md Outdated Show resolved Hide resolved

docs/tutorials/setup_acquisition/storage.md Outdated Show resolved Hide resolved

dgmccart and others added 2 commits September 5, 2024 13:08

Update docs/tutorials/access_data/framedata.md

343176f

Co-authored-by: Alan Liddell <aliddell@chanzuckerberg.com>

Update docs/tutorials/setup_acquisition/storage.md

9744b73

Co-authored-by: Alan Liddell <aliddell@chanzuckerberg.com>

dgmccart merged commit a73d0ee into main Sep 5, 2024

dgmccart deleted the dgm_chunking branch September 5, 2024 20:09

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Uh oh!

Updating Tutorials for 0.3.0 #86

Updating Tutorials for 0.3.0 #86

Uh oh!

dgmccart commented Aug 26, 2024 •

edited

Loading

Uh oh!

dgmccart commented Aug 26, 2024

Uh oh!

dgmccart commented Sep 4, 2024

Uh oh!

melissawm commented Sep 4, 2024

Uh oh!

aliddell left a comment

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

Updating Tutorials for 0.3.0 #86

Updating Tutorials for 0.3.0 #86

Uh oh!

Conversation

dgmccart commented Aug 26, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

dgmccart commented Aug 26, 2024

Uh oh!

dgmccart commented Sep 4, 2024

Uh oh!

melissawm commented Sep 4, 2024

Uh oh!

aliddell left a comment

Choose a reason for hiding this comment

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

dgmccart commented Aug 26, 2024 •

edited

Loading