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Merged
merged 36 commits into from
Sep 5, 2024
Merged

Updating Tutorials for 0.3.0 #86

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588dcf6
Update trigger.md
dgmccart Aug 7, 2024
4e070a4
Update get_started.md
dgmccart Aug 7, 2024
7fae038
Update configure.md
dgmccart Aug 7, 2024
d92d994
Update start_stop.md
dgmccart Aug 7, 2024
94725cc
Update framedata.md
dgmccart Aug 7, 2024
2dfc1cf
Update storage.md
dgmccart Aug 7, 2024
35719b1
Update drivers.md
dgmccart Aug 7, 2024
9b71e06
Update select.md
dgmccart Aug 7, 2024
d882ba7
Update sample_props.json
dgmccart Aug 7, 2024
482106a
Update get_started.md
dgmccart Aug 26, 2024
37f4bbe
Update chunked.md
dgmccart Aug 26, 2024
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Update compressed.md
dgmccart Aug 26, 2024
853d0e5
Update configure.md
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Update multiscale.md
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Update chunked.md
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Update chunked.md
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Update framedata.md
dgmccart Aug 26, 2024
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Update livestream_napari.py
dgmccart Aug 26, 2024
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Update multiscale.md
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Update multiscale.md
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Update framedata.md
dgmccart Aug 28, 2024
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Update livestream_napari.py
dgmccart Aug 28, 2024
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Update get_started.md
dgmccart Sep 5, 2024
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Update framedata.md
dgmccart Sep 5, 2024
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Update docs/tutorials/access_data/framedata.md
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Update docs/tutorials/setup_acquisition/configure.md
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Update select.md
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Update storage.md
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Update index.md
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Update docs/tutorials/access_data/framedata.md
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Update docs/tutorials/setup_acquisition/storage.md
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11 changes: 6 additions & 5 deletions docs/examples/livestream_napari.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -64,11 +64,12 @@ def is_not_done() -> bool:
def next_frame(): #-> Optional[npt.NDArray[Any]]:
"""Get the next frame from the current stream."""
if nframes[stream_id] < config.video[stream_id].max_frame_count:
if packet := runtime.get_available_data(stream_id):
n = packet.get_frame_count()
nframes[stream_id] += n
f = next(packet.frames())
return f.data().squeeze().copy()
with runtime.get_available_data(stream_id) as data:
if packet := data:
n = packet.get_frame_count()
nframes[stream_id] += n
f = next(packet.frames())
return f.data().squeeze().copy()
return None

stream = 1
Expand Down
370 changes: 178 additions & 192 deletions docs/examples/sample_props.json
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Original file line number Diff line number Diff line change
@@ -1,200 +1,186 @@
{
"video": [
{
"camera": {
"identifier": {
"id": [
0,
1
],
"kind": "Camera",
"name": "simulated: radial sin"
},
"settings": {
"binning": 1,
"exposure_time_us": 0.0,
"input_triggers": {
"acquisition_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"exposure": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
}
},
"line_interval_us": 0.0,
"offset": [
0,
0
],
"output_triggers": {
"exposure": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
"video": [
{
"camera": {
"identifier": {
"id": [
0,
1
],
"kind": "Camera",
"name": "simulated: radial sin"
},
"settings": {
"binning": 1,
"exposure_time_us": 0.0,
"input_triggers": {
"acquisition_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"exposure": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
}
},
"line_interval_us": 0.0,
"offset": [
0,
0
],
"output_triggers": {
"exposure": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"trigger_wait": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
}
},
"pixel_type": "U16",
"readout_direction": "Forward",
"shape": [
1,
1
]
}
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"trigger_wait": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
}
},
"pixel_type": "U16",
"readout_direction": "Forward",
"shape": [
1,
1
]
}
},
"frame_average_count": 0,
"max_frame_count": 18446744073709551615,
"storage": {
"identifier": {
"id": [
0,
0
],
"kind": "NONE",
"name": ""
},
"settings": {
"chunking": {
"max_bytes_per_chunk": 16777216,
"tile": {
"height": 0,
"planes": 0,
"width": 0
"frame_average_count": 0,
"max_frame_count": 18446744073709551615,
"storage": {
"identifier": {
"id": [
0,
5
],
"kind": "Storage",
"name": "trash"
},
"settings": {
"acquisition_dimensions": [],
"enable_multiscale": false,
"external_metadata_json": "",
"filename": "",
"first_frame_id": 0,
"pixel_scale_um": [
0.0,
0.0
]
},
"write_delay_ms": 0.0
}
},
"enable_multiscale": false,
"external_metadata_json": "",
"filename": "",
"first_frame_id": 0,
"pixel_scale_um": [
0.0,
0.0
]
},
"write_delay_ms": 0.0
}
},
{
"camera": {
"identifier": {
"id": [
0,
0
],
"kind": "NONE",
"name": ""
},
"settings": {
"binning": 1,
"exposure_time_us": 0.0,
"input_triggers": {
"acquisition_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"exposure": {
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"enable": false,
"kind": "Input",
"line": 0
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
}
},
"line_interval_us": 0.0,
"offset": [
0,
0
],
"output_triggers": {
"exposure": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
{
"camera": {
"identifier": {
"id": [
0,
0
],
"kind": "NONE",
"name": ""
},
"settings": {
"binning": 1,
"exposure_time_us": 0.0,
"input_triggers": {
"acquisition_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"exposure": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
}
},
"line_interval_us": 0.0,
"offset": [
0,
0
],
"output_triggers": {
"exposure": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"trigger_wait": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
}
},
"pixel_type": "U16",
"readout_direction": "Forward",
"shape": [
0,
0
]
}
},
"frame_start": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
},
"trigger_wait": {
"edge": "Rising",
"enable": false,
"kind": "Input",
"line": 0
"frame_average_count": 0,
"max_frame_count": 18446744073709551615,
"storage": {
"identifier": {
"id": [
0,
0
],
"kind": "NONE",
"name": ""
},
"settings": {
"acquisition_dimensions": [],
"enable_multiscale": false,
"external_metadata_json": "",
"filename": "",
"first_frame_id": 0,
"pixel_scale_um": [
0.0,
0.0
]
},
"write_delay_ms": 0.0
}
},
"pixel_type": "U16",
"readout_direction": "Forward",
"shape": [
0,
0
]
}
},
"frame_average_count": 0,
"max_frame_count": 18446744073709551615,
"storage": {
"identifier": {
"id": [
0,
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],
"kind": "NONE",
"name": ""
},
"settings": {
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"tile": {
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}
},
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"external_metadata_json": "",
"filename": "",
"first_frame_id": 0,
"pixel_scale_um": [
0.0,
0.0
]
},
"write_delay_ms": 0.0
}
}
]
]
}
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